<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Publications | Mohamed Ghalwash</title><link>https://m-fakhry.github.io/publications/</link><atom:link href="https://m-fakhry.github.io/publications/index.xml" rel="self" type="application/rss+xml"/><description>Publications</description><generator>HugoBlox Kit (https://hugoblox.com)</generator><language>en-us</language><lastBuildDate>Thu, 24 Oct 2024 00:00:00 +0000</lastBuildDate><image><url>https://m-fakhry.github.io/media/icon_hu_1c0e9cb08cfb822a.png</url><title>Publications</title><link>https://m-fakhry.github.io/publications/</link></image><item><title>Explanation Ontology: A General-Purpose, Semantic Representation for Supporting User-Centered Explanations</title><link>https://m-fakhry.github.io/publications/chari-2023-explanation/</link><pubDate>Thu, 24 Oct 2024 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/chari-2023-explanation/</guid><description/></item><item><title>Data-Driven Phenotyping of Presymptomatic Type 1 Diabetes Using Longitudinal Autoantibody Profiles</title><link>https://m-fakhry.github.io/publications/ghalwash-2024-data/</link><pubDate>Tue, 11 Jun 2024 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2024-data/</guid><description/></item><item><title>Refining the Definition of Stage 1 Type 1 Diabetes: An Ontology-Driven Analysis of the Heterogeneity of Multiple Islet Autoimmunity</title><link>https://m-fakhry.github.io/publications/brigitte-2023-refining/</link><pubDate>Sun, 01 Oct 2023 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/brigitte-2023-refining/</guid><description/></item><item><title>Informing Clinical Assessment by Contextualizing Post-Hoc Explanations of Risk Prediction Models in Type-2 Diabetes</title><link>https://m-fakhry.github.io/publications/chari-2023-informing/</link><pubDate>Thu, 02 Feb 2023 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/chari-2023-informing/</guid><description/></item><item><title>Islet Autoantibody Screening In At-Risk Adolescents To Predict Type 1 Diabetes Until Young Adulthood: A Prospective Cohort Study</title><link>https://m-fakhry.github.io/publications/ghalwash-2023-islet/</link><pubDate>Wed, 18 Jan 2023 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2023-islet/</guid><description>&lt;p&gt;00350-9)&lt;/p&gt;</description></item><item><title>Interpretable Stratification for Chronic Kidney Disease Progression Based on Time to Event Analysis</title><link>https://m-fakhry.github.io/publications/ghalwash-2023-interpretable/</link><pubDate>Sun, 01 Jan 2023 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2023-interpretable/</guid><description/></item><item><title>Data-Driven Disease Progression Modeling</title><link>https://m-fakhry.github.io/publications/ng-2022-data/</link><pubDate>Fri, 25 Nov 2022 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ng-2022-data/</guid><description/></item><item><title>Two-Age Islet-Autoantibody Screening for Childhood Type 1 Diabetes: A Prospective Cohort Study</title><link>https://m-fakhry.github.io/publications/ghalwash-2022-two/</link><pubDate>Tue, 05 Jul 2022 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2022-two/</guid><description>&lt;p&gt;00141-3)&lt;/p&gt;</description></item><item><title>Improving the Computational Complexity of the COOL Screening Tool</title><link>https://m-fakhry.github.io/publications/ghalwash-2022-improving/</link><pubDate>Wed, 01 Jun 2022 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2022-improving/</guid><description/></item><item><title>Predicting Pain Now and in the Future Through Personalized Physiologic Mobility Metrics</title><link>https://m-fakhry.github.io/publications/rauck-2022-predicting/</link><pubDate>Wed, 01 Jun 2022 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/rauck-2022-predicting/</guid><description/></item><item><title>An Ontology for Fairness Metrics</title><link>https://m-fakhry.github.io/publications/franklin-2022-ontology/</link><pubDate>Sat, 21 May 2022 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/franklin-2022-ontology/</guid><description/></item><item><title>Human-Centered Explainability For Life Sciences, Healthcare, And Medical Informatics</title><link>https://m-fakhry.github.io/publications/dey-2022-human/</link><pubDate>Fri, 13 May 2022 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/dey-2022-human/</guid><description/></item><item><title>Finding Precise Causal Multi-Drug-Drug Interaction for Adverse Drug Reactions</title><link>https://m-fakhry.github.io/publications/dey-2021-finding/</link><pubDate>Tue, 28 Dec 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/dey-2021-finding/</guid><description/></item><item><title>Carbon Tuner</title><link>https://m-fakhry.github.io/publications/chakraborty-2021-carbon/</link><pubDate>Tue, 21 Dec 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/chakraborty-2021-carbon/</guid><description/></item><item><title>G-Net: a Recurrent Network Approach to G-Computation for Counterfactual Prediction Under a Dynamic Treatment Regime</title><link>https://m-fakhry.github.io/publications/li-2021-g/</link><pubDate>Sat, 04 Dec 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/li-2021-g/</guid><description/></item><item><title>A Comparative Time-to-Event Analysis Across Health Systems</title><link>https://m-fakhry.github.io/publications/ghalwash-2021-acomparative/</link><pubDate>Wed, 03 Nov 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2021-acomparative/</guid><description/></item><item><title>Impact of Clinical and Genomic Factors on COVID-19 Disease Severity</title><link>https://m-fakhry.github.io/publications/dey-2021-impact/</link><pubDate>Wed, 03 Nov 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/dey-2021-impact/</guid><description/></item><item><title>Disease Progression Modeling Workbench 360</title><link>https://m-fakhry.github.io/publications/suryanarayanan-2021-disease/</link><pubDate>Sun, 12 Sep 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/suryanarayanan-2021-disease/</guid><description/></item><item><title>Leveraging Clinical Context for User-Centered Explainability: A Diabetes Use Case</title><link>https://m-fakhry.github.io/publications/chari-2021-leveraging/</link><pubDate>Sun, 15 Aug 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/chari-2021-leveraging/</guid><description/></item><item><title>Transparent and Distributed AI Prediction Modeling: A Case Study on Pediatric Covid</title><link>https://m-fakhry.github.io/publications/saiz-2022-transparent/</link><pubDate>Thu, 05 Aug 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/saiz-2022-transparent/</guid><description/></item><item><title>A Method For Developing An Ontology Based On Biomarker Information To Improve Clinical Prediction</title><link>https://m-fakhry.github.io/publications/ng-2021-amethod/</link><pubDate>Fri, 16 Jul 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ng-2021-amethod/</guid><description/></item><item><title>Islet Autoimmunity and HLA Markers of Presymptomatic and Clinical Type 1 Diabetes: Joint Analyses of Prospective Cohort Studies in Finland, Germany, Sweden, and the U.S.</title><link>https://m-fakhry.github.io/publications/anand-2021-islet/</link><pubDate>Wed, 23 Jun 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/anand-2021-islet/</guid><description/></item><item><title>Blending Knowledge in Deep Recurrent Networks for Adverse Event Prediction at Hospital Discharge</title><link>https://m-fakhry.github.io/publications/chakraborty-2021-blending/</link><pubDate>Mon, 17 May 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/chakraborty-2021-blending/</guid><description/></item><item><title>Phenotypical Ontology Driven Framework For Multi-Task Learning</title><link>https://m-fakhry.github.io/publications/ghalwash-2021-phenotypical/</link><pubDate>Sat, 10 Apr 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2021-phenotypical/</guid><description/></item><item><title>System and Method of On-Demand Treatment of Pain in Targeted Area of a Human Subject</title><link>https://m-fakhry.github.io/publications/sow-2021-system/</link><pubDate>Wed, 31 Mar 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/sow-2021-system/</guid><description/></item><item><title>Finding Causal Mechanistic Drug-Drug Interactions from Observational Data</title><link>https://m-fakhry.github.io/publications/dey-2020-finding/</link><pubDate>Mon, 25 Jan 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/dey-2020-finding/</guid><description/></item><item><title>Predicting Type 1 Diabetes Onset using Novel Survival Analysis with Biomarker Ontology</title><link>https://m-fakhry.github.io/publications/li-2020-predicting/</link><pubDate>Mon, 25 Jan 2021 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/li-2020-predicting/</guid><description/></item><item><title>A System for Generating Specialized Phenotypical Embedding</title><link>https://m-fakhry.github.io/publications/ghalwash-2022-asystem/</link><pubDate>Wed, 30 Dec 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2022-asystem/</guid><description/></item><item><title>ODVICE: An Ontology-Driven Visual Analytic Tool for Interactive Cohort Extraction</title><link>https://m-fakhry.github.io/publications/ghalwash-2020-odvice/</link><pubDate>Sat, 12 Dec 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2020-odvice/</guid><description/></item><item><title>A Multi-Task Learning Approach to Personalized Progression Modeling</title><link>https://m-fakhry.github.io/publications/ghalwash-2020-multi/</link><pubDate>Mon, 30 Nov 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2020-multi/</guid><description/></item><item><title>Leveraging Longitudinal Autoantibody for Phenotyping of Progression Rates to Type 1 Diabetes</title><link>https://m-fakhry.github.io/publications/ghalwash-2020-leveraging/</link><pubDate>Wed, 18 Nov 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2020-leveraging/</guid><description/></item><item><title>COOL - A Screening Collaborative Open Outcomes Tool</title><link>https://m-fakhry.github.io/publications/ghalwash-2022-cool/</link><pubDate>Thu, 05 Nov 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2022-cool/</guid><description/></item><item><title>Computational Phenotyping with Limited Data and Winning the Partners Healthcare Biobank Challenge</title><link>https://m-fakhry.github.io/publications/chakraborty-2020-computational/</link><pubDate>Wed, 21 Oct 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/chakraborty-2020-computational/</guid><description/></item><item><title>Optimal Ages for Screening for T1D Risk in Children</title><link>https://m-fakhry.github.io/publications/ghalwash-2020-optimal/</link><pubDate>Tue, 16 Jun 2020 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2020-optimal/</guid><description/></item><item><title>Learning Interpretable Strategies in the Presence of Existing Domain Knowledge</title><link>https://m-fakhry.github.io/publications/xiao-2019-learning/</link><pubDate>Mon, 30 Dec 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/xiao-2019-learning/</guid><description/></item><item><title>eXITs: An Ensemble Approach for Imputing Missing EHR Data</title><link>https://m-fakhry.github.io/publications/codella-2019-exits/</link><pubDate>Thu, 13 Jun 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/codella-2019-exits/</guid><description/></item><item><title>Analysis of Longitudinal Autoantibody Profiles and the Progression Rates to Type 1 Diabetes</title><link>https://m-fakhry.github.io/publications/ghalwash-2019-analysis/</link><pubDate>Tue, 11 Jun 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2019-analysis/</guid><description/></item><item><title>Predicting Onset of Type 1 Diabetes Using a Novel Interaction Model</title><link>https://m-fakhry.github.io/publications/liu-2019-predicting/</link><pubDate>Tue, 11 Jun 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/liu-2019-predicting/</guid><description/></item><item><title>Presymptomatic and Clinical T1D in The US, Sweden, and Finland: Joint Analysis of Four Birth Cohort Studies</title><link>https://m-fakhry.github.io/publications/anand-2019-presymptomatic/</link><pubDate>Tue, 11 Jun 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/anand-2019-presymptomatic/</guid><description/></item><item><title>Sensitivity Analysis of Alternate Definitions of Multiple Islet Autoantibody Positivity</title><link>https://m-fakhry.github.io/publications/liu-2019-sensitivity/</link><pubDate>Tue, 11 Jun 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/liu-2019-sensitivity/</guid><description/></item><item><title>Temporal Graph Regression via Structure-Aware Intrinsic Representation Learning</title><link>https://m-fakhry.github.io/publications/han-2019-temporal/</link><pubDate>Sat, 04 May 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/han-2019-temporal/</guid><description/></item><item><title>Attentive Explainability For Patient Temporal Embedding</title><link>https://m-fakhry.github.io/publications/sowattentive/</link><pubDate>Tue, 01 Jan 2019 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/sowattentive/</guid><description/></item><item><title>Estimating Causal Multi-Drug-Drug Interaction for Adverse Drug Reactions</title><link>https://m-fakhry.github.io/publications/dey-2018-estimating/</link><pubDate>Wed, 07 Nov 2018 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/dey-2018-estimating/</guid><description/></item><item><title>Ranking Based Multitask Learning of Scoring Functions</title><link>https://m-fakhry.github.io/publications/stojkovic-2017-ranking/</link><pubDate>Sat, 30 Dec 2017 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/stojkovic-2017-ranking/</guid><description/></item><item><title>Exploiting Electronic Health Records to Mine Drug Effects on Laboratory Test Results</title><link>https://m-fakhry.github.io/publications/ghalwash-2017-exploiting/</link><pubDate>Mon, 06 Nov 2017 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2017-exploiting/</guid><description/></item><item><title>Cost Sensitive Time-series Classification</title><link>https://m-fakhry.github.io/publications/roychoudhury-2017-cost/</link><pubDate>Thu, 21 Sep 2017 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/roychoudhury-2017-cost/</guid><description/></item><item><title>Continuous Conditional Dependency Network for Structured Regression</title><link>https://m-fakhry.github.io/publications/han-2017-continuous/</link><pubDate>Thu, 09 Feb 2017 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/han-2017-continuous/</guid><description/></item><item><title>Minimum Redundancy Maximum Relevance Feature Selection Approach For Temporal Gene Expression Data</title><link>https://m-fakhry.github.io/publications/radovic-2017-minimum/</link><pubDate>Tue, 03 Jan 2017 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/radovic-2017-minimum/</guid><description/></item><item><title>A Fast Structured Regression For Large Networks</title><link>https://m-fakhry.github.io/publications/zhou-2016-fast/</link><pubDate>Thu, 08 Dec 2016 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/zhou-2016-fast/</guid><description/></item><item><title>Joint Learning of Representation and Structure for Sparse Regression on Graphs</title><link>https://m-fakhry.github.io/publications/han-2016-joint/</link><pubDate>Sat, 07 May 2016 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/han-2016-joint/</guid><description/></item><item><title>Effectiveness of Multiple Blood-Cleansing Interventions in Sepsis, Characterized in Rats</title><link>https://m-fakhry.github.io/publications/stojkovic-2016-effectiveness/</link><pubDate>Thu, 21 Apr 2016 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/stojkovic-2016-effectiveness/</guid><description/></item><item><title>Structured Feature Selection Using Coordinate Descent Optimization</title><link>https://m-fakhry.github.io/publications/ghalwash-2016-structured/</link><pubDate>Fri, 08 Apr 2016 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2016-structured/</guid><description/></item><item><title>Extending the Modelling Capacity of Gaussian Conditional Random Fields while Learning Faster</title><link>https://m-fakhry.github.io/publications/glass-2016-extending/</link><pubDate>Wed, 17 Feb 2016 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/glass-2016-extending/</guid><description/></item><item><title>False Alarm Suppression in Early Prediction of Cardiac Arrhythmia</title><link>https://m-fakhry.github.io/publications/roychoudhury-2015-false/</link><pubDate>Wed, 04 Nov 2015 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/roychoudhury-2015-false/</guid><description/></item><item><title>Patient--Specific Early Classification of Multivariate Observations</title><link>https://m-fakhry.github.io/publications/ghalwash-2015-patient/</link><pubDate>Thu, 01 Jan 2015 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2015-patient/</guid><description/></item><item><title>Utilizing Temporal Patterns For Estimating Uncertainty In Interpretable Early Decision Making</title><link>https://m-fakhry.github.io/publications/ghalwash-2014-utilizing/</link><pubDate>Fri, 01 Aug 2014 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2014-utilizing/</guid><description/></item><item><title>A Data-Driven Model for Optimizing Therapy Duration for Septic Patients</title><link>https://m-fakhry.github.io/publications/ghalwash-2014-data/</link><pubDate>Sat, 26 Apr 2014 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2014-data/</guid><description/></item><item><title>Extraction Of Interpretable Multivariate Patterns For Early Diagnostics</title><link>https://m-fakhry.github.io/publications/ghalwash-2013-extraction/</link><pubDate>Tue, 10 Dec 2013 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2013-extraction/</guid><description/></item><item><title>Early Diagnosis And Its Benefits In Sepsis Blood Purification Treatment</title><link>https://m-fakhry.github.io/publications/ghalwash-2013-early/</link><pubDate>Wed, 11 Sep 2013 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2013-early/</guid><description/></item><item><title>D2P2: Database Of Disordered Protein Predictions</title><link>https://m-fakhry.github.io/publications/oates-2013-d-2-p-2/</link><pubDate>Tue, 01 Jan 2013 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/oates-2013-d-2-p-2/</guid><description/></item><item><title>Interpretable Early Classification Of Multivariate Time Series</title><link>https://m-fakhry.github.io/publications/ghalwash-2013-interpretable/</link><pubDate>Tue, 01 Jan 2013 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2013-interpretable/</guid><description/></item><item><title>Early Classification of Multivariate Time Series Using A Hybrid HMM/SVM Model</title><link>https://m-fakhry.github.io/publications/ghalwash-2012-earlyb/</link><pubDate>Sun, 07 Oct 2012 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2012-earlyb/</guid><description/></item><item><title>Early Classification of Multivariate Temporal Observations By Extraction of Interpretable Shapelets</title><link>https://m-fakhry.github.io/publications/ghalwash-2012-earlya/</link><pubDate>Wed, 08 Aug 2012 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2012-earlya/</guid><description/></item><item><title>DNA Methylation Differences at Growth Related Genes Correlate With Birth Weight: A Molecular Signature Linked To Developmental Origins of Adult Disease?</title><link>https://m-fakhry.github.io/publications/turan-2012-dna/</link><pubDate>Thu, 12 Apr 2012 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/turan-2012-dna/</guid><description/></item><item><title>Uncertainty Analysis in Protein Disorder Prediction</title><link>https://m-fakhry.github.io/publications/ghalwash-2012-uncertainty/</link><pubDate>Sun, 01 Jan 2012 00:00:00 +0000</pubDate><guid>https://m-fakhry.github.io/publications/ghalwash-2012-uncertainty/</guid><description/></item></channel></rss>